自然杂志 ›› 2019, Vol. 41 ›› Issue (5): 325-334.doi: 10.3969/j.issn.0253-9608.2019.05.002

• 特约专稿 • 上一篇    下一篇

给DNA甲基化检测装上GPS,看肿瘤细胞如何变花样

徐鹏,于文强   

  1. ①上海市公共卫生临床中心,上海 201508; ②复旦大学 生物医学研究院,上海 200032
  • 收稿日期:2019-04-12 出版日期:2019-10-25 发布日期:2019-10-21
  • 通讯作者: 于文强,国家“973”项目首席科学家,研究方向:表观遗传学。

Detecting DNA methylation with GPS, revealing native characteristics of cancer cells

XU Peng①②, YU Wenqiang①②   

  1. ①Shanghai Public Health Clinical Center, Fudan University, Shanghai 201508, China;②Institutes of Biomedical Sciences, Fudan University, Shanghai 200032, China
  • Received:2019-04-12 Online:2019-10-25 Published:2019-10-21

摘要: DNA甲基化对于细胞的正常生长和增殖非常关键,其异常可能导致一系列疾病,包括癌症,因此全基因组DNA甲基化的检测对于疾病的诊断和治疗具有重要意义。文章介绍了复旦大学于文强课题组研发的全基因组DNA甲基化检测方法“导向定位测序(guide positioning sequencing, GPS)”。相比于通用的WGBS(whole-genome bisulfite sequencing),GPS具有精确性高、比对率高、检测成本低、没有序列偏好性,可同时检测表观基因组和基因组学变异等优势。利用GPS对肝癌细胞和组织进行检测和分析,我们揭示了基于DNA甲基化调控的肿瘤转移的“同化共生”新机制。

关键词: DNA甲基化, 导向定位测序(GPS), 肿瘤转移, 同化共生

Abstract: DNA methylation is vital for the cell’s growth and proliferation, and the aberrant DNA methylation pattern can induce various diseases, including cancer, thus precisely detecting whole genome DNA methylation is of great significance for both diagnosis
and treatment of diseases. Here, we introduce the novel technology called GPS (guide positioning sequencing), invented by Wenqiang Yu’s team at Fudan University, for monitoring whole genome DNA methylation. Compared with the commonly used WGBS (wholegenome bisulfite sequencing), GPS detects whole genome DNA methylation with a higher accuracy and mapping rate, a lower cost, unbiasedness in sequences, and the capability of identifying epigenome and genome variations in one go. Detecting DNA methylation pattern of hepatocellular carcinoma cell/tissue by utilizing GPS, we revealed a novel mechanism “assimilated symbiosis” for tumor metastasis based on the regulation of DNA methylation.